PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g05570
Common NameGSCOC_T00024336001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 154aa    MW: 17300.8 Da    PI: 7.9334
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g05570genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.54.8e-1338127196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+ +l++ +v+   rl lp + ++e  +k       ++ ++ g++We  +   +++++ + + GWk+Fv +n+L+ gD + F+l++ s+++ v+kv
  Cc08_g05570  38 FDVILSRTHVTPPYRLNLPTRMVSELPSK---L-VPMVLTSCGKTWETFY--HGRGRGSTKRFGWKRFVIDNDLRMGDCCFFELMECSTTKIVFKV 127
                  66677888888889999999999888433...2.24667789*****999..78878888999********************9977888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-1632131IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-1732131IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-1636131No hitNo description
SMARTSM010192.4E-538133IPR003340B3 DNA binding domain
PROSITE profilePS5086310.838133IPR003340B3 DNA binding domain
PfamPF023621.0E-942127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MTSVANRERL NFQPGSSSRT AEVDDTEYYT ISGTRPYFDV ILSRTHVTPP YRLNLPTRMV  60
SELPSKLVPM VLTSCGKTWE TFYHGRGRGS TKRFGWKRFV IDNDLRMGDC CFFELMECST  120
TKIVFKVIIL RGTLPLGEGA GDGDTPETAI FIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084333.11e-110B3 domain-containing protein Os04g0386900-like isoform X1
RefseqXP_027084334.11e-111B3 domain-containing protein Os04g0386900-like isoform X2
TrEMBLA0A068UHW61e-109A0A068UHW6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-09B3 family protein