PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g05580
Common NameGSCOC_T00024337001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 189aa    MW: 20968.1 Da    PI: 4.4563
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g05580genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.5e-1272160195
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  f+ +lt+s+v+ + +l lp + + +      + +  ++ +  g+ W+  +   + + +  ++  WkeF+++n+Lk+gD + F+l++++ ++ ++k
  Cc08_g05580  72 FDIILTKSHVGPRFQLFLPTTIVPALP----SAMVPVVLTCCGKNWNTVY--YGDRTGKRFGPSWKEFASDNELKTGDCCFFELMESTMAQIKFK 160
                  67789999*****99****99997663....33455777889********..5555555599*********************997655545555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-1565165IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-1667165IPR015300DNA-binding pseudobarrel domain
CDDcd100178.26E-1670165No hitNo description
SMARTSM010190.003372167IPR003340B3 DNA binding domain
PROSITE profilePS5086310.70172167IPR003340B3 DNA binding domain
PfamPF023629.4E-1072160IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSNQLVQPFL CAVKEEPFMT DSDTDEKPYV DLINSKSVPS GENSQLLSGS SSGMAEMDDI  60
EYWTISGKKP YFDIILTKSH VGPRFQLFLP TTIVPALPSA MVPVVLTCCG KNWNTVYYGD  120
RTGKRFGPSW KEFASDNELK TGDCCFFELM ESTMAQIKFK VIILRGDLPV LRFAEGDGET  180
PEKAIIIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082811.11e-139B3 domain-containing protein Os04g0386900-like
TrEMBLA0A068UG931e-137A0A068UG93_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.18e-08B3 family protein