PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g06160
Common NameGSCOC_T00040978001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 257aa    MW: 29921.4 Da    PI: 11.0835
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g06160genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-1720981299
                 HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  ++r+ +p +f+++ +g+   s +  +  + g++W++k+  +++     l++GW++F+++ngL+ gDfvvF+++g++ f   v vf++
  Cc08_g06160 20 FNNRIKIPPSFINHLDGE-MYSEDHAVLRRGGKKWQLKV--TNQC----LENGWRKFAQENGLEIGDFVVFRHEGNMVF--EVLVFDT 98
                 5789********666655.45668889999*********..9998....*************************99999..7877775 PP
2B3451.9e-14150235998
                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   +lk +r+ lp  fa+e+g+++++  +++l+d++ r+W+++l     ++ +++++GW e   angLk gD + ++l++ +++++ +k++ 
  Cc08_g06160 150 FNLKYRRIHLPMAFARENGLSSRRC-QMILKDQRKRKWKLQL--GYFGSNVYIGRGWFECQTANGLKIGDRFALELIS-NKKKPIMKIRG 235
                  5678899***********9997665.9***************..5555569**************************9.56668888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-21699IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-19798IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.001999IPR003340B3 DNA binding domain
CDDcd100173.94E-161097No hitNo description
SMARTSM010192.3E-161299IPR003340B3 DNA binding domain
PfamPF023625.8E-142096IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-15136234IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-16137233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-12141234No hitNo description
PROSITE profilePS5086311.194142236IPR003340B3 DNA binding domain
SMARTSM010198.4E-12143237IPR003340B3 DNA binding domain
PfamPF023621.2E-13148234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MATAIPLKSP HFFKPILPGF NNRIKIPPSF INHLDGEMYS EDHAVLRRGG KKWQLKVTNQ  60
CLENGWRKFA QENGLEIGDF VVFRHEGNMV FEVLVFDTTK NFHILLRKML LQLKQKGRLW  120
QIVLSNSHLM VNRAVLEPAH PHFISSLKPF NLKYRRIHLP MAFARENGLS SRRCQMILKD  180
QRKRKWKLQL GYFGSNVYIG RGWFECQTAN GLKIGDRFAL ELISNKKKPI MKIRGKFLST  240
HLSFYRQKVS LACLLM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171183RRCQMILKDQRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A068V1D60.0A0A068V1D6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-30B3 family protein