PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g07860
Common NameGSCOC_T00011881001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 246aa    MW: 27436.7 Da    PI: 8.239
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g07860genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.7e-3087146159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+ k+++ pr+YY+C++a +C+vkkkv+rs  dp++++ tYegeHnh+
  Cc08_g07860  87 VKDGYHWRKYGQKVTKDNPSPRAYYKCSFApSCQVKKKVQRSVGDPSILIATYEGEHNHQ 146
                  58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-3077148IPR003657WRKY domain
PROSITE profilePS5081127.12982148IPR003657WRKY domain
SuperFamilySSF1182903.01E-2683148IPR003657WRKY domain
SMARTSM007743.3E-3387147IPR003657WRKY domain
PfamPF031061.6E-2488146IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLIDLSENYH ILQSHFIDLV QKYSGDELPK SRKRMFEAEN SFNTHTNDGH EDSVLEEGGS  60
PKRPREIRTN ISRVHVRVDL SDTSLVVKDG YHWRKYGQKV TKDNPSPRAY YKCSFAPSCQ  120
VKKKVQRSVG DPSILIATYE GEHNHQHPLN AETLVSSAHG AASAAFSPGL KCFEFSSRPK  180
ETVDFTNHGL CAKFQRSVSE IGSNCIEQLM VEQIVSSLTR NPSFTTALAT AISGRLLSHD  240
SDQKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-21781481477Probable WRKY transcription factor 4
2lex_A6e-21781481477Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082793.10.0probable WRKY transcription factor 40 isoform X1
RefseqXP_027082794.10.0probable WRKY transcription factor 40 isoform X2
TrEMBLA0A068VBF40.0A0A068VBF4_COFCA; Uncharacterized protein
STRINGXP_010275778.17e-73(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45002242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-53WRKY DNA-binding protein 40