PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g09050

Common Name

GSCOC_T00017244001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Protein Properties

Length: 418aa MW: 47514.5 Da PI: 9.4747

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g09050	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.7	1.8e-17	122	214	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k ++ps v+ +l pk+f+++h+ k ++ ++l de+ +++++k+ +k++ l++GW++F ++L gD+++F+l+++++f+++v++f+ Cc08_g09050 122 FVKLMLPSQVSGGFWLQWPKDFCQKHMPK--KDEYIVLLDENEKEYDIKYLAQKSG----LSGGWRGFSIKHQLSKGDVLIFQLVDSNKFKFKVHIFK 213 89**********************866..4558***********555555....9********************99*******98 PP S CS B3 99 k 99 + Cc08_g09050 214 A 214 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-20	115	216	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.85E-21	116	215	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.07E-22	120	213	No hit	No description
SMART	SM01019	4.4E-19	122	215	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-15	122	214	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.788	122	215	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MGKYVFVKPT RKRITCMQKE NTINKKPKRE SCPPMKVKIE VDEMQITCYD EMMEKNVESS 60 HADSDKTKSS PQENRKQIMC YSKNVETSSD SSMAGSDKAK STALLDRANE FVAKLPSDDP 120 NFVKLMLPSQ VSGGFWLQWP KDFCQKHMPK KDEYIVLLDE NEKEYDIKYL AQKSGLSGGW 180 RGFSIKHQLS KGDVLIFQLV DSNKFKFKVH IFKAKGGSRK LERDNGLLNS EGKVASEIAK 240 DVKETESFNI LWNGEVIDSE ISEHVRSQYY QLCCSKKSGL HDGLVKCIDK KLAAGIISET 300 VKIADAIRAA EITTTSCNDV RRWDQTLKGF EGMGMNVAFL RAAIKNILDS IQRKQQEKIK 360 RKTNERAQAE KEMRNLETQL VNVKKKIRVL DDEINNVIRA QNEKHEHSFK EAAIAPS*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MGKYVFVKPT RKRITCMQKE NTINKKPKRE SCPPMKVKIE VDEMQITCYD EMMEKNVESS  60
HADSDKTKSS PQENRKQIMC YSKNVETSSD SSMAGSDKAK STALLDRANE FVAKLPSDDP  120
NFVKLMLPSQ VSGGFWLQWP KDFCQKHMPK KDEYIVLLDE NEKEYDIKYL AQKSGLSGGW  180
RGFSIKHQLS KGDVLIFQLV DSNKFKFKVH IFKAKGGSRK LERDNGLLNS EGKVASEIAK  240
DVKETESFNI LWNGEVIDSE ISEHVRSQYY QLCCSKKSGL HDGLVKCIDK KLAAGIISET  300
VKIADAIRAA EITTTSCNDV RRWDQTLKGF EGMGMNVAFL RAAIKNILDS IQRKQQEKIK  360
RKTNERAQAE KEMRNLETQL VNVKKKIRVL DDEINNVIRA QNEKHEHSFK EAAIAPS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027084391.1	0.0	B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A068V6G7	0.0	A0A068V6G7_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-33	B3 family protein