PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g09180
Common NameGSCOC_T00017261001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family CPP
Protein Properties Length: 554aa    MW: 60794.3 Da    PI: 8.632
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g09180genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.85e-14130170142
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                  k+kk+CnCk+s+Clk+YCeCfa+g++C+  C+C++C+N++e+
  Cc08_g09180 130 KKKKQCNCKNSRCLKLYCECFASGTYCNG-CNCTKCHNTSEH 170
                  589**************************.********9986 PP
2TCR51.42.1e-16215254140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgCnCkks ClkkYCeCf+a + Cse+C+C dCkN e
  Cc08_g09180 215 KHNKGCNCKKSGCLKKYCECFQASVLCSENCNCIDCKNFE 254
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.5E-15130170IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.456131255IPR005172CRC domain
PfamPF036389.4E-11132167IPR005172CRC domain
SMARTSM011142.0E-19215256IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.6E-13218253IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MEASSPTAPK NGFPVKRLAR QLDFTATPAM CTPLAANVIL PEHPQAQLQS KLLALAKPAP  60
PAILVSQPQV VSGEKSPPSR AMQQRRKPKV PVVMRLAHTV RRPTSQEVNK YGSPKLPDHR  120
SIELRDATPK KKKQCNCKNS RCLKLYCECF ASGTYCNGCN CTKCHNTSEH EAQRKEAIEI  180
ILERNPDAFQ PKIAKSPIGT TDGSVEAYDV TIMGKHNKGC NCKKSGCLKK YCECFQASVL  240
CSENCNCIDC KNFEGSKERD YVFHEGPTND FRFVNQAINA AICGTSKFSY FNTLPATKKR  300
KTEQLICRAT SVDAVKDRIE QIRQENDLAP TTASFSPLSA PSAQPTTAMK FTHRPLLAEI  360
LQSEHLKELC SLLVVVSAEA AKKISGKKHV MNKGDIEEVE TSISSAIQGS KDVHAQYRNE  420
SFNTSQVEGN LAYGCQSGEG DRETGSTASP ETLPLMSNDR DVATEGADSP TGASNPKRNT  480
TIKSPNREVL KEIDAEQERL VLKNFCGFLN KLITCTIIRE TSHLSLSRNG LESQLEVVQI  540
CNSNPTIQTR KSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-331232642132Protein lin-54 homolog
5fd3_B3e-331232642132Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084303.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A068V6120.0A0A068V612_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1933233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-111Tesmin/TSO1-like CXC domain-containing protein