PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g10080
Common NameGSCOC_T00026967001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 249aa    MW: 27203.2 Da    PI: 6.512
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g10080genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.3e-141486146
                     TSSS-HHHHHHHHHHHHHTTTT............................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg............................tWktIartmgkgRtlkqcksrwqk 46
                     rg+W++eEd++l++     G+g                            +W+ Ia+ ++ gRt++++k++w++
      Cc08_g10080 14 RGPWSPEEDQILKKHLLDSGTGgnwitlpqkaassnypsffvtsnivlnrRWSIIASQLP-GRTDNDVKNHWNS 86
                     89**********************************************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-20594IPR009057Homeodomain-like
PROSITE profilePS5129413.622992IPR017930Myb domain
SMARTSM007174.8E-131390IPR001005SANT/Myb domain
SuperFamilySSF466894.39E-111489IPR009057Homeodomain-like
CDDcd001671.76E-81688No hitNo description
PfamPF002491.6E-66286IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRTPCCDKT KVKRGPWSPE EDQILKKHLL DSGTGGNWIT LPQKAASSNY PSFFVTSNIV  60
LNRRWSIIAS QLPGRTDNDV KNHWNSKLKK KQLAASFRKP ASNTTNDNSS RPASFTSTTS  120
TTTPYSLETQ AGAFHPNFSA PLSNLSTEDC TDISVGTEGS KVCSSISKTI EYMSSSSQAQ  180
EDSIISESTS FGTITNTINN SMPWLDDYGA IDRGLPMEMT GTAAYSYEIL SGIWSRETVL  240
EALHDPYF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082805.11e-150transcription factor RAX2-like
TrEMBLA0A068UIY10.0A0A068UIY1_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1559057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.14e-32myb domain protein 68