PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g11450
Common NameGSCOC_T00027146001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 542aa    MW: 59831.1 Da    PI: 6.8217
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g11450genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.3e-16741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Cc08_g11450  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                 ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.3E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-11546No hitNo description
CDDcd002028.65E-17654No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003207.1E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139193.1E-8285366IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPDDLEDY  60
RNSRVKTISV KNKEAKVLKR KPNHEIEVGA FSPDYNHGFR KGLDEDTSNR SSSGSAISNS  120
ESCAQFGSAD ASDLTGPAQP MVWDSMVPSR KRTCVTRAKP SPVEKLTKDL YTILHEHSPY  180
FSGSSEEDLL FESDKPMVSV EIGHGSVLIR HPSSIAREEE SEASSLSVDN KLHPVNEAYS  240
RLTTFSVHTD NKGVNLPNPG AEKVKKPTVQ GGEQEQIKWD KDQLEKLQLL GHHSSPLRYV  300
DLKDLLNFGE FVSCLTKEEH QQLLKYLPSI DTSGPPESLR NMFDSIQFEE NLSSFQKLLA  360
EGVFDNTLLG VKTEDCRTLK KFVLCNLTKS KWVGQYNLLK DVKCRSSISM SEVGGEFDAV  420
ATGHSVNAKR SRDGQYQKFP GAKTIMKSPK RVMMKASYEH REVTDNDGSC FSPRSLFALP  480
ADNSSLVLDS FNTAESSDQD LLLDVPSNSS FPQAELLLPT SSFGAQASTC SSSGYPQLLH  540
P*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027081227.10.0GATA transcription factor 26 isoform X1
RefseqXP_027181532.10.0GATA transcription factor 26 isoform X1
SwissprotQ8W4H11e-145GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A068UJE30.0A0A068UJE3_COFCA; Uncharacterized protein
STRINGXP_009772103.10.0(Nicotiana sylvestris)
STRINGXP_009626897.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-144GATA transcription factor 26