PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g12080
Common NameGSCOC_T00030532001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 184aa    MW: 21044.1 Da    PI: 10.9541
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g12080genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.7e-141257146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W++eEde+l + vk+ G+++W++I ++  + Rt+k+c++rw +
      Cc08_g12080 12 KGPWSAEEDEILMNFVKENGPRDWSSIRSKGLLPRTGKSCRLRWVN 57
                     79*************************8876677**********87 PP
2Myb_DNA-binding41.72.7e-1369109345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++++eE+   +++ + lG++ W++Ia +++ gRt++++k++w 
      Cc08_g12080  69 KFSAEEERVVLELQATLGNK-WAAIATYLP-GRTDNDVKNFWS 109
                      79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.294763IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-20761IPR009057Homeodomain-like
SuperFamilySSF466897.86E-289108IPR009057Homeodomain-like
SMARTSM007171.6E-111161IPR001005SANT/Myb domain
PfamPF002492.4E-121257IPR001005SANT/Myb domain
CDDcd001671.70E-111459No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1762114IPR009057Homeodomain-like
PROSITE profilePS5129418.10664116IPR017930Myb domain
SMARTSM007171.1E-1166114IPR001005SANT/Myb domain
PfamPF002494.6E-1269109IPR001005SANT/Myb domain
CDDcd001673.79E-969108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MERLRAQEDI KKGPWSAEED EILMNFVKEN GPRDWSSIRS KGLLPRTGKS CRLRWVNKLQ  60
PNLKKRGCKF SAEEERVVLE LQATLGNKWA AIATYLPGRT DNDVKNFWST RQKRLARILR  120
ASSQPNRAHK HKAKATVVNE ASTLQARTPS PHYTISFHNF HLFFCFFFTI PSLSAPFLSS  180
SIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2791144106B-MYB
1h8a_C2e-27911424126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027182424.17e-98probable transcription factor MYB58
SwissprotQ0JB894e-63MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A068UNH61e-133A0A068UNH6_COFCA; Uncharacterized protein
STRINGEMJ045443e-67(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-64MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]