PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g12970

Common Name

GSCOC_T00030405001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 326aa MW: 37669.5 Da PI: 6.8665

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g12970	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.6	2e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kk+++k+++l +vik+vd+y++ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++s Cc08_g12970 7 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKDVDLYRIEPWDLQElcKIGTeEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYS- 102 69**************************.9***********954555552555**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 k++l+g++ktLvfykgrap+g+k+dW+mheyrle Cc08_g12970 103 KHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-61	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.945	7	156	IPR003441	NAC domain
Pfam	PF02365	4.4E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK DVDLYRIEPW DLQELCKIGT 60 EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSKHSLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GTPQAKGWVV CRVFKKRLTT VRKEGDLESL CWYDDQVSFM 180 PEFDSPRRIP QSYSSYNPQY SCKQEFELQN NIPQDVFLQL PQLESPKVPQ SITNVSCIYI 240 NNTDQGVEQV TDWRVLDKFV ASQLSHEDAA KQTAYSDGPS SLQVAEHMNM LVNDESKQQE 300 MTSPEFGCVS APSPQVIFGS KNMLI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-50	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027084108.1	0.0	NAC domain-containing protein 7-like
Refseq	XP_027084109.1	0.0	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-138	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A068UNM0	0.0	A0A068UNM0_COFCA; Uncharacterized protein
STRING	EOY24430	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-136	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]