PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g13700
Common NameGSCOC_T00030313001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 214aa    MW: 24105.7 Da    PI: 9.5268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g13700genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-1065116154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  +r  h  +Er+RR+++   ++ Lr+l+P       ++K s ++    +v+Y++++
  Cc08_g13700  65 KRIIHRDVERQRRQEMAALYQSLRSLVPDeY---LQGKRSISDHMHGTVKYVRHM 116
                  6888*************************77...9******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-1363136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.18E-864120No hitNo description
PROSITE profilePS5088812.32264116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-965132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-765116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.003370122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEHDELFHFL SIPPQQQMPQ DTPLMARAPN ANSCKPKSCT KKRKSSVAFG DNNVLDNESP  60
VEHKKRIIHR DVERQRRQEM AALYQSLRSL VPDEYLQGKR SISDHMHGTV KYVRHMKRKV  120
DELISKRDEL QELMKPGCSF SMLTEFTVSL NKTSVRVQSS TTGMQIILKT TLRGGLPLSK  180
FLSVLNGEGL SVISCVSTNA NEGQLHVMES EVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13543PKSCTKKRK
26476KRIIHRDVERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082846.11e-155transcription factor bHLH118-like isoform X1
TrEMBLA0A068UNL41e-157A0A068UNL4_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-31bHLH family protein