PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g13960
Common NameGSCOC_T00030281001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 260aa    MW: 28804.7 Da    PI: 4.9847
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g13960genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-1756109156
          AP2   1 sgykGVrwdkkrgr..WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  + y+G+r+++ +++  Wv+e+r+p   +k+ r++lg++ tae+Aa+a++ a+++l+g+
  Cc08_g13960  56 PVYRGIRRRR-WNSnkWVCELREP---NKQSRIWLGTYPTAEMAARAYDVAALALRGH 109
                  68****9777.88888*******8...336**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-1356109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-2957118IPR001471AP2/ERF domain
PROSITE profilePS5103222.70857116IPR001471AP2/ERF domain
SMARTSM003806.6E-2657122IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2057118IPR016177DNA-binding domain
CDDcd000181.16E-2658118No hitNo description
PRINTSPR003672.0E-75869IPR001471AP2/ERF domain
PRINTSPR003672.0E-78298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDASSSCSDP HPFGSLSDVS PTTAQRAINS DEEIILSSSR PKKRAGRKKF KETRHPVYRG  60
IRRRRWNSNK WVCELREPNK QSRIWLGTYP TAEMAARAYD VAALALRGHL ACLNFADSVW  120
RLPVPESRDA KDIRKAAAEA AEMFRSQEEC DNTTSEASAS GSGSESGDHH HDRVGEEIGD  180
ITHDNNEVSS FDHGEALQKN GEESTSSMFM DDEALFDVHG LMAHMAEGLL LSPPHCLGDG  240
YSFDEVENDA EVPLWSYTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13551151271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14664RKKFKETRHPVYRGIRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027183331.11e-172dehydration-responsive element-binding protein 1A-like
TrEMBLA0A068UQD50.0A0A068UQD5_COFCA; Uncharacterized protein
STRINGPOPTR_0012s13870.18e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.17e-48dehydration response element B1A