PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g15290
Common NameGSCOC_T00035457001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 190aa    MW: 21301.4 Da    PI: 9.4258
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g15290genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.3e-31110168159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+  +prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+
  Cc08_g15290 110 LDDGYKWRKYGQKAVKNCAHPRSYYRCTHHTCNVKKQIQRLSKDTSIVVTTYEGIHNHP 168
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-3297168IPR003657WRKY domain
SuperFamilySSF1182902.22E-27102169IPR003657WRKY domain
PROSITE profilePS5081128.116105170IPR003657WRKY domain
SMARTSM007749.6E-36110169IPR003657WRKY domain
PfamPF031061.8E-24111168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEEGSPIAAG NNVPYLFTPT LSSTAPLYPP LLMNQSMQSP QIASDMDWAT ILSSTAVNCE  60
QKPTSPCLSM ASRNAREGDN LDKNKVKPGK TKKCVPPRIA FHTRSTEDIL DDGYKWRKYG  120
QKAVKNCAHP RSYYRCTHHT CNVKKQIQRL SKDTSIVVTT YEGIHNHPCE KLMETLSPLL  180
KQLQFLSRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-2498167271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027182489.11e-139probable WRKY transcription factor 43
SwissprotQ8VWQ41e-56WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A068UUY21e-140A0A068UUY2_COFCA; Uncharacterized protein
STRINGXP_010261390.17e-75(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63742433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.16e-59WRKY DNA-binding protein 56