PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g17040
Common NameGSCOC_T00035684001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 420aa    MW: 46024 Da    PI: 6.8704
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g17040genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.41.1e-31134238199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  Cc08_g17040 134 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElGKDRL 231
                  89***************************966778999*************************************************66699999999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  Cc08_g17040 232 FIDWRRR 238
                  9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-42128246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-29131237IPR015300DNA-binding pseudobarrel domain
CDDcd100175.22E-27132221No hitNo description
SMARTSM010191.4E-22134239IPR003340B3 DNA binding domain
PROSITE profilePS5086314.649134239IPR003340B3 DNA binding domain
PfamPF023623.1E-29134238IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAPRQPGGGG GGGGGGYYEE DSSRATRPFS QPPSAAAATP QHHHHQYQQQ RDLLLPPSYN  60
HHQPRGPWDD RRVSFRGYSC GGASQLDLMA MDSSSSPTTN GSSCSNIVED ADEPRVGGGN  120
TTSASLRIER EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDSSTNEKG LLLNFEDRNG  180
KPWRFRYSYW NSSQSYVMTK GWSRFVKEKK LDAGDIVSFQ RGVGELGKDR LFIDWRRRPD  240
APDHPQLPPS INPHPSHPHH LSNNYAYGNV MTGNPCSGPF IYLRSAAAAR PHPVNLGIGT  300
EDGEGEEPMV FESVPLVQGK AAAKRLRLFG VNMDCPISES SSEDQEDDNC DILVLPSTAV  360
AHPTMPSQFP HLPYNYASRP PLHTMPSNNK SSSSDSKGKA SMSLDLDIYL DGVAPGTRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-661292393114B3 domain-containing transcription factor NGA1
5os9_B2e-661292393114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082046.10.0B3 domain-containing protein Os03g0120900-like
RefseqXP_027082047.10.0B3 domain-containing protein Os03g0120900-like
RefseqXP_027082049.10.0B3 domain-containing protein Os03g0120900-like
RefseqXP_027082050.10.0B3 domain-containing protein Os03g0120900-like
RefseqXP_027082051.10.0B3 domain-containing protein Os03g0120900-like
RefseqXP_027082052.10.0B3 domain-containing protein Os03g0120900-like
RefseqXP_027183229.10.0B3 domain-containing protein Os03g0120900-like
RefseqXP_027183230.10.0B3 domain-containing protein Os03g0120900-like
TrEMBLA0A068UVI60.0A0A068UVI6_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000318631e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.18e-75B3 family protein