PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g17070
Common NameGSCOC_T00035689001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 592aa    MW: 65875.1 Da    PI: 5.4763
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g17070genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79e-5391451128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+evd++k+ePwdLp+   +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s+ 
  Cc08_g17070   9 LPLGFRFRPTDEELINHYLRLKINGRHDEV-QVIPEVDVCKWEPWDLPQlsVIKTDDPEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSHr 105
                  699************************999.99**************95457888889*************************************986 PP

          NAM  96 .......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++l+g+kktLvfy+grapkge+t+W+mheyr+
  Cc08_g17070 106 sspssnsSTHLIGMKKTLVFYRGRAPKGERTSWIMHEYRA 145
                  66666555555***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-606168IPR003441NAC domain
PROSITE profilePS5100557.199168IPR003441NAC domain
PfamPF023652.9E-2710144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MGVVSTESLP LGFRFRPTDE ELINHYLRLK INGRHDEVQV IPEVDVCKWE PWDLPQLSVI  60
KTDDPEWFFF CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSHRSSPSS NSSTHLIGMK  120
KTLVFYRGRA PKGERTSWIM HEYRATEPDL DGTASDQAAY VLCRLFHKPD ETADSSKYDE  180
VEPSGSSPNT VKSSPDDASS DLFQERLVLD MQVCKQPAGI ERWLTDKSDD VTSNSLLHVE  240
SCTSDVEDHL IEAAITEVYP TTGGHPMCHE SRDGLDCKVF SPLVSQNHTE IGCPDSPFAD  300
DFGCNQKGMH FQDGTSEQDV SLTELLHVLQ NHDAYPCKES TSEKFLYVGS RSMLPDQLHE  360
GPAGNCNPRD WGAFGKAGED MVIEQTLTCP RSFQSQAPIR DADSRLSNDV GASHDHYADP  420
VSLGGDHQEG TGIKIHRRQA SNRPGCENLA KQGTAARRFR LQVDSAPIPN HDGKYSRAKG  480
FSNEEQDERS VTTEDDEYSK SSCTSDEPEG GSSSSESGIS ARKFKAGLAL TNKEADEKDK  540
VKWKKFLLRP PGDSSGTGSL TVYGVSMYLV MVLFILFVFL WKCPNFFALH I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-4611684165NO APICAL MERISTEM PROTEIN
1ut4_B8e-4611684165NO APICAL MERISTEM PROTEIN
1ut7_A8e-4611684165NO APICAL MERISTEM PROTEIN
1ut7_B8e-4611684165NO APICAL MERISTEM PROTEIN
3swm_A9e-4611687168NAC domain-containing protein 19
3swm_B9e-4611687168NAC domain-containing protein 19
3swm_C9e-4611687168NAC domain-containing protein 19
3swm_D9e-4611687168NAC domain-containing protein 19
3swp_A9e-4611687168NAC domain-containing protein 19
3swp_B9e-4611687168NAC domain-containing protein 19
3swp_C9e-4611687168NAC domain-containing protein 19
3swp_D9e-4611687168NAC domain-containing protein 19
4dul_A8e-4611684165NAC domain-containing protein 19
4dul_B8e-4611684165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027081653.10.0protein NTM1-like 9 isoform X1
RefseqXP_027081654.10.0protein NTM1-like 9 isoform X1
RefseqXP_027181236.10.0protein NTM1-like 9
TrEMBLA0A068UVE10.0A0A068UVE1_COFCA; Uncharacterized protein
STRINGPOPTR_0011s15230.11e-157(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14316710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-122NAC transcription factor-like 9