PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g01190
Common NameGSCOC_T00017842001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TALE
Protein Properties Length: 381aa    MW: 42353.6 Da    PI: 6.2293
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g01190genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-093083422155
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k +yps++++  LA+++gL+++q+ +WF N+R ++
  Cc09_g01190 308 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 342
                  569*****************************885 PP
2ELK413.9e-14262283122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK qLlrKYsgyLgsLkqEF+
  Cc09_g01190 262 ELKGQLLRKYSGYLGSLKQEFM 283
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-19125169IPR005540KNOX1
PfamPF037904.7E-22127165IPR005540KNOX1
SMARTSM012567.6E-27174225IPR005541KNOX2
PfamPF037913.4E-21177224IPR005541KNOX2
SMARTSM011882.8E-8262283IPR005539ELK domain
PROSITE profilePS5121311.174262282IPR005539ELK domain
PfamPF037896.4E-11262283IPR005539ELK domain
PROSITE profilePS5007112.989282345IPR001356Homeobox domain
SuperFamilySSF466891.97E-19284359IPR009057Homeodomain-like
SMARTSM003897.4E-13284349IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-28287347IPR009057Homeodomain-like
CDDcd000861.89E-12294346No hitNo description
PfamPF059207.0E-17302341IPR008422Homeobox KN domain
PROSITE patternPS000270320343IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEGSSSTSCL MMAFGGDNSS GALGGPTSPM MMMMMPPQMT SSTHLNAETN TLYLPLPHAH  60
PSDTQDHPNN RRTAATSASS MMQLDDENHN NSHHNLSSST TGGGSFFVDH SNNDIGGSYS  120
SSPPPSVKAK IMAHPHYHRL LAAYINCQKI GAPPEVVARL EEVCTSAASL SRNNTSCIGE  180
DPALDQFMEA YCEMLTKYEE ELSKPFKEAM LFLSRVECQF KALTLASSDS AACGEAMDRN  240
GSSEEEVDVN NSFIDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL  300
DWWSRHYKWP YPSESQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ LVVMDATHPH  360
YYMDNVLGNP FPMDISPALL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277286LKQEFMKKRK
2283287KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087318.10.0homeobox protein knotted-1-like LET6 isoform X2
SwissprotP466081e-150HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A068U8C30.0A0A068U8C3_COFCA; Uncharacterized protein
STRINGXP_002518420.11e-179(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-142KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]