PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g01680
Common NameGSCOC_T00017777001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 91aa    MW: 10226.7 Da    PI: 10.051
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g01680genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-074076239
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                       ++++E+ l ++  ++ G+ +W++Ia +++ gRt+ +
      Cc09_g01680 40 PEFSEDEEMLMARMYRLVGPSRWALIAGRIP-GRTPQE 76
                     689****************************.***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.5043485IPR017877Myb-like domain
SuperFamilySSF466891.17E-73882IPR009057Homeodomain-like
SMARTSM007170.0013887IPR001005SANT/Myb domain
PfamPF002493.0E-64078IPR001005SANT/Myb domain
CDDcd001679.62E-74184No hitNo description
Gene3DG3DSA:1.10.10.608.8E-94282IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MADSHRTRVD GNDKVEKGTA SIEIFLSMAK GTIKRRESKP EFSEDEEMLM ARMYRLVGPS  60
RWALIAGRIP GRTPQEMEKY FTSKNASTSN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087767.11e-45transcription factor CPC-like
RefseqXP_027185716.11e-45transcription factor CPC-like
TrEMBLA0A068U7835e-60A0A068U783_COFCA; Uncharacterized protein
STRINGcassava4.1_026343m1e-19(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65791932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.13e-15MYB_related family protein