PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc09_g02750

Common Name

GSCOC_T00017633001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 192aa MW: 21554.6 Da PI: 5.6013

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc09_g02750	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.5	8.2e-42	24	123	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk lrr+C+++Cvlapyfp+++p +f +vhk++Gasn+++ l++lpe++r+dam+s+vyeA ar+rdPvyG++g+++ lqqq+ l++ela+++ Cc09_g02750 24 PCAACKSLRRRCPDNCVLAPYFPSSEPLRFTIVHKVYGASNIVRRLQELPEHQRSDAMNSMVYEAAARIRDPVYGCAGTVTLLQQQILGLQEELAKAQ 121 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Cc09_g02750 122 AE 123 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.52	23	124	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-40	24	121	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MEHCRQQSTP PCPDQNATPP IQYPCAACKS LRRRCPDNCV LAPYFPSSEP LRFTIVHKVY 60 GASNIVRRLQ ELPEHQRSDA MNSMVYEAAA RIRDPVYGCA GTVTLLQQQI LGLQEELAKA 120 QAEILNMQCQ IANLVSLNWM EMFPSQEQEP INVSGLQQDI IHISEKQPCD ARDTTNFSLE 180 QLCTHEKPMG I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-41	18	129	5	116	LOB family transfactor Ramosa2.1
5ly0_B	1e-41	18	129	5	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087601.1	1e-141	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	3e-54	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A068U9L5	1e-140	A0A068U9L5_COFCA; Uncharacterized protein
STRING	POPTR_0008s04350.1	2e-58	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-51	LOB domain-containing protein 1