PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g03140
Common NameGSCOC_T00017585001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 231aa    MW: 25179.1 Da    PI: 5.7417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g03140genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-1955104255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr++  +g+WvAeIr+p     +  +r++lg+f t +eAa+a++ a+k+l+g
  Cc09_g03140  55 TYRGVRQRT-WGKWVAEIREP-----NhgARVWLGTFNTSYEAARAYDDAAKRLYG 104
                  69****999.**********9.....336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.66E-3054113No hitNo description
PfamPF008478.2E-1455104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2955113IPR001471AP2/ERF domain
SMARTSM003803.4E-3455118IPR001471AP2/ERF domain
PROSITE profilePS5103221.69455112IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2055112IPR016177DNA-binding domain
PRINTSPR003672.0E-105667IPR001471AP2/ERF domain
PRINTSPR003672.0E-107894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MMERVENEGV NVGIPVDKKP KKEAAISTSM KKITVGGSRK GCMRGKGGPE NAFCTYRGVR  60
QRTWGKWVAE IREPNHGARV WLGTFNTSYE AARAYDDAAK RLYGKCAKLN LPEEDQPPSP  120
PGSSSVASAA YSNNTGYKNG QDLTNEHQSP ELEDKKNGTS VLDEVSIFKD INGEFAFDET  180
PAPSLLGEEQ ILNWPEYPFD NGFHWSNDGG ISVGGLIDHA VVYKLLGPPN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17561141574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6873750.0JQ687375.1 Coffea arabica strain Laurina DREB2 (dreb2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087726.11e-172dehydration-responsive element-binding protein 2D-like
RefseqXP_027089426.11e-172dehydration-responsive element-binding protein 2D-like
TrEMBLA0A068U7X31e-170A0A068U7X3_COFCA; Uncharacterized protein
STRINGXP_009630729.12e-45(Nicotiana tomentosiformis)
STRINGMigut.F01818.1.p1e-45(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.15e-42ERF family protein