PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc09_g04160

Common Name

GSCOC_T00017460001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 153aa MW: 16902.2 Da PI: 8.3168

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc09_g04160	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.9	7.3e-38	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+C+++C+l+p+fp ++p++fa+vhk++Gasnv k+l+++p ++r +a+++++yeA +r++dPvyG+vg++ lqqq+ ++ +la+++ Cc09_g04160 5 RCAGCKYLRRRCPSNCILSPHFPPNDPQRFACVHKIYGASNVAKMLQQVPVQQRAEAANAMYYEAYCRIKDPVYGCVGTVALLQQQIFDAECQLAKIQ 102 6**********************************************************************************************999 PP DUF260 99 ee 100 +e Cc09_g04160 103 AE 104 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.707	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.8E-38	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MNSKRCAGCK YLRRRCPSNC ILSPHFPPND PQRFACVHKI YGASNVAKML QQVPVQQRAE 60 AANAMYYEAY CRIKDPVYGC VGTVALLQQQ IFDAECQLAK IQAEIAVLNG HREATHQNQQ 120 VKVATSSANF TLESGGEGTF SSTYDPSICQ FY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-34	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-34	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00381	DAP	Transfer from AT3G26620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087620.1	1e-110	LOB domain-containing protein 23-like
Swissprot	P59467	8e-52	LBD23_ARATH; LOB domain-containing protein 23
TrEMBL	A0A068U791	1e-110	A0A068U791_COFCA; Uncharacterized protein
STRING	POPTR_0012s13910.1	5e-56	(Populus trichocarpa)
STRING	cassava4.1_026224m	3e-56	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	1e-48	LOB domain-containing protein 23