PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g05260
Common NameGSCOC_T00007103001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 181aa    MW: 20723.5 Da    PI: 4.5
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g05260genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.72.7e-121663249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +ie +   + +f+k rn ++K A+EL++ C +++ viifs+tg+ + +
  Cc09_g05260 16 KIEKEDDLYASFTKLRNELFKEASELCTECKVDIGVIIFSPTGEPHSF 63
                 6788888899*********************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-14766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.194767IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-20878IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-8929IPR002100Transcription factor, MADS-box
PfamPF003196.7E-171663IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGDKQMKGRE KIEMKKIEKE DDLYASFTKL RNELFKEASE LCTECKVDIG VIIFSPTGEP  60
HSFFHPNADK VVNRFLRRDM PRDDADQLAE ALARARVEQL EQQLHELEVQ QEIEEERAKK  120
LDELFAQDGI VGWPGVPIDQ MDMEMVTNLE SKIDNLLLQL EEHAKKLTEE ASSNVPPSKI  180
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087965.11e-122agamous-like MADS-box protein AGL28
RefseqXP_027183810.11e-122agamous-like MADS-box protein AGL28
TrEMBLA0A068VEV51e-129A0A068VEV5_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.13e-16AGAMOUS-like 28