PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g06510
Common NameGSCOC_T00005102001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family AP2
Protein Properties Length: 93aa    MW: 10466.1 Da    PI: 10.93
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g06510genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2301.3e-094987134
          AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslg 34
                 s y+GV++++++gr++A+++d  ++n+   k+ k+++lg
  Cc09_g06510 49 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLG 87
                 57*******************766644467557****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-64987IPR001471AP2/ERF domain
PROSITE profilePS510328.9665087IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MVGPIPGGGG AGDELAMYRG LKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT  60
GRYEAHLWDK STWNQNQNKK GKQVYLGMQF HW*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089167.18e-57LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor At2g41710
RefseqXP_027089276.11e-56AP2-like ethylene-responsive transcription factor At2g41710
RefseqXP_027184637.11e-56AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
RefseqXP_027184638.11e-56AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK24e-46AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A068VA753e-62A0A068VA75_COFCA; Uncharacterized protein
STRINGXP_010545326.11e-45(Tarenaya hassleriana)
STRINGevm.model.supercontig_224.41e-45(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.13e-48AP2 family protein