PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g07070
Common NameGSCOC_T00036322001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 91aa    MW: 10488 Da    PI: 10.4294
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g07070genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.41.9e-13957149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k+ie+k ++qvtf+kRr+ ++K A EL    daevav i s+ g+++ +
  Cc09_g07070  9 KKIEDKKKQQVTFTKRRKRLFKMAMELGQKYDAEVAVTIRSNAGNIFAF 57
                 78******************************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-13160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.367161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-21279IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-12323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-161057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MGKRRIEIKK IEDKKKQQVT FTKRRKRLFK MAMELGQKYD AEVAVTIRSN AGNIFAFGHP  60
SIDSIVQRYE EAKETESSAA KRDNDVHQEM *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027086465.15e-26MADS-box transcription factor 23-like
TrEMBLA0A068UYB64e-59A0A068UYB6_COFCA; Uncharacterized protein
STRINGXP_009776268.14e-21(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-13AGAMOUS-like 62