PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g08020
Common NameGSCOC_T00003796001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 209aa    MW: 22861.3 Da    PI: 7.8413
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g08020genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.53.8e-32113169158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep++VNaKQy++Il+RRq+Rak+e+e+k   ksrkpylheSRh hAlrR+Rg+gGrF
  Cc09_g08020 113 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHLHALRRARGTGGRF 169
                  69***************************9.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.8E-36111172IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.559112172IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.9E-27114169IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.1E-24115137IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860117137IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.1E-24146169IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MTSSLHNLSD NGEADEQQSH SESLFQSACQ VTGISHPVMT APSMQYAAPP QLGAGITMAQ  60
AGYPYPDPYY RSIFAPYDNK PYPAQPYPTQ PMVHLQLMGI QQAGVPLPSD AVEEPVFVNA  120
KQYHGILRRR QSRAKAESEN KALKSRKPYL HESRHLHALR RARGTGGRFL NAKKDENTQK  180
ENDSGDNPDS DISLTAKKDG HASSESAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-21112177166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4721775e-41AM472177.2 Vitis vinifera contig VV78X243821.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087816.11e-149nuclear transcription factor Y subunit A-7-like
RefseqXP_027184808.11e-149nuclear transcription factor Y subunit A-7-like
SwissprotQ84JP11e-67NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A068V9V11e-153A0A068V9V1_COFCA; Uncharacterized protein
STRINGVIT_10s0003g04650.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66502333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.24e-70nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]