PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g08870
Common NameGSCOC_T00023156001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 341aa    MW: 37181.4 Da    PI: 4.2917
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g08870genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.92.4e-222573149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k+ie+k + qvtfskRr+g++KKA ELSvLC+a+va+++ s+ gk++ +
  Cc09_g08870 25 KKIEEKNKLQVTFSKRRKGLFKKAAELSVLCGADVAILVQSPAGKVFGF 73
                 68*******************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-311776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.8241777IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-251891IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-191939IPR002100Transcription factor, MADS-box
PfamPF003193.7E-232673IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-193954IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-195475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEETTVVKRT TTGRRTTGRR KIEIKKIEEK NKLQVTFSKR RKGLFKKAAE LSVLCGADVA  60
ILVQSPAGKV FGFGGRASID TIIDRYLAGK ASEKSLMQNK GDNSKGFWWE QPIDNLDLEE  120
LLEYKAAMEI LRKNVLARAD EIAAAAANNI DAAKNNVAAN NNSAANNNAE SSSGLFIPNV  180
AVDSFGGLPV IHCESDDSGG GDDDDEEEED DNMNANVKAS AVENLNVETN RHQPLMLGNP  240
KLESTDDSDV LFMFENPNPE IDINRPLMLT IPKLEIVDSD QPLMFEIPSP ETNNNQLLMS  300
ENPNPQTNSD QPLVLENPIT ETNGEVAEVS ENPNPPKTSS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027088718.15e-80agamous-like MADS-box protein AGL23
TrEMBLA0A068UDR50.0A0A068UDR5_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.12e-23M-type_MADS family protein