PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g09510
Common NameGSCOC_T00000753001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 240aa    MW: 26511.8 Da    PI: 7.3907
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g09510genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.00031872231354
                  HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R+r+++    Lr ++P a       ++ +++L +Av+Y+ksL
  Cc09_g09510 187 RQRMRKMVKALRGIVPGA-----HQMDTVAVLDEAVRYLKSL 223
                  899999999********8.....58***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.017174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-4183229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-6185228No hitNo description
SuperFamilySSF474593.14E-8185230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-6185230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MQKNQQLFPR KPFLSPANEA GGYMLSAPIS SVFGETICPP GATGLWPLHD VEFRPSEACP  60
RNFIIFDQTD NRSQIMLHPA TGSRFCYPGS NTWAAPSEYK AIKFADNEHR EVTSLKEDSD  120
DINALLSSDD EHEECDDDEL STARANVYCG SNSPDSCSNY ESPPRKTRIT SSRKTSGDIS  180
SCTGRKRQRM RKMVKALRGI VPGAHQMDTV AVLDEAVRYL KSLKVEVQKL GVGKLKSYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184190RKRQRMR
2185190KRQRMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087451.10.0transcription factor bHLH144-like
RefseqXP_027087452.10.0transcription factor bHLH144-like
TrEMBLA0A068VHI31e-180A0A068VHI3_COFCA; Uncharacterized protein
STRINGXP_009801820.18e-78(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81241924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.24e-26bHLH family protein