PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc09_g10560

Common Name

GSCOC_T00041031001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 311aa MW: 35181.6 Da PI: 8.1048

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc09_g10560	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	147.3	8.1e-46	13	141	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgkdkevlsk..k 96 pGfrFhPt+eel+++yLk v gkkl++ ++i ++iy+++PwdLp ++ +e+ewyfF++rd+k + g r+nr+tk+g+Wkatg+d+++ls Cc09_g10560 13 PGFRFHPTEEELLDFYLKSTVLGKKLHC-DIIGCLNIYDHDPWDLPGLARIGEREWYFFVPRDRKRGSggGGRPNRTTKRGFWKATGSDRKILSLsnP 109 9*************************.99***********8778899********9963367****************997656 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfy+grap+g ktdWvm+eyrl Cc09_g10560 110 KKMIGLKKTLVFYTGRAPRGCKTDWVMNEYRL 141 778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.401	11	170	IPR003441	NAC domain
SuperFamily	SSF101941	6.8E-53	12	170	IPR003441	NAC domain
Pfam	PF02365	4.7E-25	13	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDDSTTSSDL ELPGFRFHPT EEELLDFYLK STVLGKKLHC DIIGCLNIYD HDPWDLPGLA 60 RIGEREWYFF VPRDRKRGSG GGGRPNRTTK RGFWKATGSD RKILSLSNPK KMIGLKKTLV 120 FYTGRAPRGC KTDWVMNEYR LPDHHDRDHR TCHSLSGTPN AVVLCKIYRK ATSLRVLEQR 180 AGVDQQQPEE AKALSIPVLL HHHHHTSKLS SGLDKKHVAI TPAITADDDE EDDEDDHDSL 240 ECKGKSRTCT NNLRLPSTTT TGKSGNKLAE LQVPSRLSMD WTQDPFWAQL RSPWLDNLAT 300 PNYHANVLNF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-43	13	173	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-43	13	173	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-43	13	173	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-43	13	173	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	8e-43	13	173	22	171	NAC domain-containing protein 19
3swm_B	8e-43	13	173	22	171	NAC domain-containing protein 19
3swm_C	8e-43	13	173	22	171	NAC domain-containing protein 19
3swm_D	8e-43	13	173	22	171	NAC domain-containing protein 19
3swp_A	8e-43	13	173	22	171	NAC domain-containing protein 19
3swp_B	8e-43	13	173	22	171	NAC domain-containing protein 19
3swp_C	8e-43	13	173	22	171	NAC domain-containing protein 19
3swp_D	8e-43	13	173	22	171	NAC domain-containing protein 19
4dul_A	8e-43	13	173	19	168	NAC domain-containing protein 19
4dul_B	8e-43	13	173	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027088277.1	0.0	NAC domain-containing protein 22-like isoform X2
Refseq	XP_027185268.1	0.0	NAC domain-containing protein 22-like isoform X2
Swissprot	Q10S65	4e-91	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A068V1R7	0.0	A0A068V1R7_COFCA; Uncharacterized protein
STRING	GLYMA11G10230.1	1e-108	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3531	22	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	2e-78	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]