PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g01330
Common NameGSCOC_T00024604001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 195aa    MW: 21875.2 Da    PI: 9.2663
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g01330genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.23.7e-13141187449
                  XCHHHCHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKka.eieeLeekvkeLeaeNkaLkkel 49 
                    r +r++kNRe+A rsR+RK++ ++ eLe kv+ L +eN +L+ + 
  Cc10_g01330 141 CHRNKRMIKNRESAARSRARKQQaYTSELEIKVARLMEENARLRRQQ 187
                  5799*****************7549******************9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0029136190IPR004827Basic-leucine zipper domain
PfamPF001701.5E-10140189IPR004827Basic-leucine zipper domain
CDDcd147076.70E-20142189No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-10143188No hitNo description
SuperFamilySSF579591.5E-7143189No hitNo description
PROSITE patternPS000360145160IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEEVWKDICP SALLHQPTST SSSAAALEGI VFQEFLSRPS RAQYDSTSRH RHHHHHHHHP  60
GRQSSLESID RGSFGSHSQG QPAPAATASI TLSLNSTRPP PSSSFSLPLD HDLDADANLN  120
PPTVEFSILP EKRASQDEDT CHRNKRMIKN RESAARSRAR KQQAYTSELE IKVARLMEEN  180
ARLRRQQQEK VKHI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154162ARSRARKQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3088021e-146AJ308802.1 Coffea arabica microsatellite DNA, clone 73-5CTG.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089733.11e-119protein FD-like isoform X1
RefseqXP_027089734.11e-119protein FD-like isoform X1
TrEMBLA0A068UIA51e-140A0A068UIA5_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35722239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.22e-10basic region/leucine zipper motif 27