PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc10_g02200

Common Name

GSCOC_T00024719001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

SRS

Protein Properties

Length: 365aa MW: 38801.5 Da PI: 7.9993

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g02200	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	224.2	2.6e-69	121	282	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrel...kskkqsalss 88 gt++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++ + +++kr re+ +s+l++ Cc10_g02200 121 GGTMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQTQQQQQQqnqqqlsliRGDNPKRLRENpggGGGGSSSLAC 218 689*************************************************99988877776678889888888888888887666677888999 PP DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 t+l++++s l++ ++P+ev+ +a frcvrvs++dd+ee++aYqtav+igGhvfkGiLydqGle+ Cc10_g02200 219 TRLPTSTS--GLDVGNFPAEVNYPATFRCVRVSAMDDAEEQYAYQTAVNIGGHVFKGILYDQGLES 282 99988865..59999**********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.2E-67	123	281	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.4E-27	125	167	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.3E-26	233	280	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MSGFFSLGGG KEQEQQEQQD TTNNSSFYLF KNEEIYNKGF ELWQQYYQLH QQRIQHHHHH 60 QVVGQDVDFS VGPSRRIISS GSGGSGSIGD DSSYRSAGFR VMRHGGGGGT GSGSSSGGGG 120 GGTMNCQDCG NQAKKDCPHM RCRTCCKSRG FQCQTHVKST WVPAAKRRER QQQLSALQTQ 180 QQQQQQNQQQ LSLIRGDNPK RLRENPGGGG GGSSSLACTR LPTSTSGLDV GNFPAEVNYP 240 ATFRCVRVSA MDDAEEQYAY QTAVNIGGHV FKGILYDQGL ESRYATSGGA GAGEASSGGG 300 GGHGHHHDHD PQPPLNLIGA AAAATANAAV TSTNPALTML DPSIYPTPLS AFMAGTQFFP 360 PPRS*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MSGFFSLGGG KEQEQQEQQD TTNNSSFYLF KNEEIYNKGF ELWQQYYQLH QQRIQHHHHH  60
QVVGQDVDFS VGPSRRIISS GSGGSGSIGD DSSYRSAGFR VMRHGGGGGT GSGSSSGGGG  120
GGTMNCQDCG NQAKKDCPHM RCRTCCKSRG FQCQTHVKST WVPAAKRRER QQQLSALQTQ  180
QQQQQQNQQQ LSLIRGDNPK RLRENPGGGG GGSSSLACTR LPTSTSGLDV GNFPAEVNYP  240
ATFRCVRVSA MDDAEEQYAY QTAVNIGGHV FKGILYDQGL ESRYATSGGA GAGEASSGGG  300
GGHGHHHDHD PQPPLNLIGA AAAATANAAV TSTNPALTML DPSIYPTPLS AFMAGTQFFP  360
PPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF025303	3e-34	EF025303.1 Catharanthus roseus clone 2D81 DNA-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027090043.1	0.0	protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	1e-88	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A068UFV7	0.0	A0A068UFV7_COFCA; Uncharacterized protein
STRING	Gorai.002G125600.1	1e-117	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	8e-64	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]