PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g02270
Common NameGSCOC_T00024726001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 258aa    MW: 27914.6 Da    PI: 7.434
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g02270genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-193988255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  ykGVr++  +g+WvAeIr+p   + r  r +lg+f+t  eAa a++aa++kl+g
  Cc10_g02270 39 AYKGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFDTSHEAAIAYDAAARKLYG 88
                 59****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-133888IPR001471AP2/ERF domain
SMARTSM003807.3E-3339102IPR001471AP2/ERF domain
PROSITE profilePS5103222.0763996IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-213997IPR016177DNA-binding domain
PRINTSPR003671.1E-94051IPR001471AP2/ERF domain
CDDcd000181.18E-194098No hitNo description
Gene3DG3DSA:3.30.730.104.9E-304097IPR001471AP2/ERF domain
PRINTSPR003671.1E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDADRSGNGN GRPGKKPAQA SSRKGCMRGK GGPENASCAY KGVRQRTWGK WVAEIREPNR  60
GSRLWLGTFD TSHEAAIAYD AAARKLYGTA AKLNLPHLYR RPQHIPVYST LNTTTPIDTG  120
GENQTGLRPV PFQQSPFRNF ASSSNSSYPP QCQPNERLFF QTETNATTTG YLAGTTTAGV  180
TSVPNDNNNF VDDNGNEAVE SEEGTMRGMW NKLNANLPAI DDSSIWAEAQ AASPFQAAVT  240
DPGIFGGNFE DSNYPWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1740991575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027148674.10.0dehydration-responsive element-binding protein 2D-like
TrEMBLA0A068UGP50.0A0A068UGP5_COFCA; Uncharacterized protein
STRINGXP_009621512.14e-59(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-47ERF family protein