PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g02800
Common NameGSCOC_T00024789001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 95aa    MW: 10950.3 Da    PI: 8.8144
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g02800genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.91.9e-07651346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+   +l+ +a + + ++   +++  a+ +g g+t +++k ++ +
      Cc10_g02800  6 TWTAKQNKLFENALATYDKDtpdRFHNLAKAVG-GKTVEEVKRHYEM 51
                     7********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.566257IPR017884SANT domain
SMARTSM007172.7E-6355IPR001005SANT/Myb domain
CDDcd001674.24E-6653No hitNo description
Gene3DG3DSA:1.10.10.601.0E-5659IPR009057Homeodomain-like
SuperFamilySSF466891.28E-11760IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASNSTWTAK QNKLFENALA TYDKDTPDRF HNLAKAVGGK TVEEVKRHYE MLVQDINHIE  60
SGKVPLPNYS SNGNSNKEYQ YMHEEQRMKY LKLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-33294693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089785.15e-66protein RADIALIS-like 3
RefseqXP_027092702.15e-66protein RADIALIS-like 3
RefseqXP_027149598.15e-66protein RADIALIS-like 3
SwissprotF4JVB83e-36RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A068UG091e-64A0A068UG09_COFCA; Uncharacterized protein
STRINGXP_010102066.12e-44(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-38RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]