PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g03670
Common NameGSCOC_T00024900001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 346aa    MW: 39405.9 Da    PI: 9.5156
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g03670genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23e-1825112196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  ff++l  s  + +++l +p kfa++ ++k      ++l+ +sg +W+  l  +  +++ +l++GWk+Fv ++ Lke+D+++Fk++g s+f   v +
  Cc10_g03670  25 FFQTL--SGRNYRNQLAIPQKFANNLKEK--LVGAVSLKGPSGLEWKAGL--TMIDDTLYLKEGWKKFVVDHSLKENDVLIFKYVGASRF--DVLM 112
                  67777..78888999********555444..5558***************..99999****************************99888..5555 PP
2B344.52.8e-14225306186
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                  f+ v+ p +v +   l +p + a++++ +  +s++ltl+  + ++W+v++ y++  ++  l++GWk+Fv++n L+e D+++F l+ 
  Cc10_g03670 225 FIVVMRPTHVYRGFYLQIPSEWATKYMPN--RSQDLTLQV-KDKTWKVRF-YKRDYRTGGLAGGWKRFVHENFLEEFDVCLFNLVT 306
                  788999********************866..566677555.66*******.7666666789*********************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-2121115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-2223114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.43823116IPR003340B3 DNA binding domain
SMARTSM010192.3E-1625116IPR003340B3 DNA binding domain
CDDcd100178.40E-1825114No hitNo description
PfamPF023621.3E-1525109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-22219321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-18222321IPR015300DNA-binding pseudobarrel domain
CDDcd100178.07E-19224321No hitNo description
PROSITE profilePS5086312.393225323IPR003340B3 DNA binding domain
SMARTSM010193.0E-12225323IPR003340B3 DNA binding domain
PfamPF023622.8E-12225306IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGDDGRACRK WEEEIYWSHF QAAQFFQTLS GRNYRNQLAI PQKFANNLKE KLVGAVSLKG  60
PSGLEWKAGL TMIDDTLYLK EGWKKFVVDH SLKENDVLIF KYVGASRFDV LMFDYQSLCE  120
KESSYFIKRC ENGGTDGGCK RKDNPTETIE VTNEASHDVS ESTPSKRPRK HGALPPRSRG  180
RQRGTCSSIN RSVFSGPASH RRQVTEEDKD EALKMACASA SENSFIVVMR PTHVYRGFYL  240
QIPSEWATKY MPNRSQDLTL QVKDKTWKVR FYKRDYRTGG LAGGWKRFVH ENFLEEFDVC  300
LFNLVTGAAT DDIVMDVSIF KVVEGVIPVT RLPPINLKGR KPMKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-1719432617146B3 domain-containing transcription factor VRN1
4i1k_B7e-1719432617146B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091562.10.0B3 domain-containing protein REM16-like
TrEMBLA0A068UH600.0A0A068UH60_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-61B3 family protein