PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g03680
Common NameGSCOC_T00024901001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 571aa    MW: 63913.9 Da    PI: 8.45
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g03680genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-17161009100
                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                  ++ +s  l lp kf ++++g +++  t  l  +sg++W  +l  +++ +  +l++GW  Fv+++ L++gD++vF++dg+  f  +v+vf+ks
  Cc10_g03680  16 SS-SSEALKLPFKFKKHIDGTTPG--TAFLLGPSGNTWYANL--TQQNDDLFLQDGWVAFVRDHSLESGDSLVFRYDGNLHF--TVQVFDKS 100
                  44.44559******9888888555..8***************..999999**************************997777..9***9985 PP
2B351.41.9e-16248342198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f kv+++ + + s  l +p +fa +h   ++++++++l +++g+sW+++ i  ++ + ++++ +GW +Fv++n+++egD+++F+l+++ e   +v+++
  Cc10_g03680 248 FMKVMKRFNISGSYTLNVPYQFAMAHL--PKCKVKIVLHNLKGESWTINSIPtTRVQTSHTFCGGWLGFVRDNNINEGDICIFELVHKCEL--RVHIV 341
                  67777777777888899******9995..35999****************77566666699***********************9985444..77776 PP

                  - CS
           B3  98 r 98 
                  r
  Cc10_g03680 342 R 342
                  5 PP
3B351.12.4e-16456548196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+ v+++ +v+ s  l +p +f  +h   + + ++++l++++g+ W+v+ i + k ++ +++ +GW  Fv++n+++ gD+++F+l+g++e   +v++
  Cc10_g03680 456 FVRVMKKFNVSGSYTLKIPYQFSMQHL--PSCRTEVILRNLKGKCWTVNSIPTIKVQTlHTFCGGWMAFVRDNDIQMGDICIFELIGKNEL--RVHI 548
                  667778888999999*******98885..45889****************998888888999************************96555..6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-242102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-223102IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-17798No hitNo description
PROSITE profilePS5086314.1427100IPR003340B3 DNA binding domain
SMARTSM010191.2E-109100IPR003340B3 DNA binding domain
PfamPF023624.2E-151599IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-23241342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-24241342IPR015300DNA-binding pseudobarrel domain
CDDcd100172.44E-20246342No hitNo description
PfamPF023623.4E-14248342IPR003340B3 DNA binding domain
PROSITE profilePS5086313.338248344IPR003340B3 DNA binding domain
SMARTSM010199.1E-16248344IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-23451549IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-24452553IPR015300DNA-binding pseudobarrel domain
CDDcd100176.33E-21454548No hitNo description
PfamPF023622.4E-13456548IPR003340B3 DNA binding domain
SMARTSM010192.9E-11456552IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084456552IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MWDDKKPHFL VGFNPSSSSE ALKLPFKFKK HIDGTTPGTA FLLGPSGNTW YANLTQQNDD  60
LFLQDGWVAF VRDHSLESGD SLVFRYDGNL HFTVQVFDKS SCEKESTFSC ECSQSPSNYN  120
CRLMKKRDRE NSALLDCIIE GIPKRVRTSQ VNTQCITTIH ELNRDLTDKN ECSEEEAGYF  180
SERCQEPNFL NQIENGSCTL KNSVTIAVPS VRNSEATTGE RTGKEDLLLS AAEAERVARA  240
FTSSLPCFMK VMKRFNISGS YTLNVPYQFA MAHLPKCKVK IVLHNLKGES WTINSIPTTR  300
VQTSHTFCGG WLGFVRDNNI NEGDICIFEL VHKCELRVHI VRVRREGVND RSENEAHKMI  360
VNSSCATPLK ISRRKAMKIS TKPCNLSLQQ LKKFDKKGHD PIKVKCGNES ISGELVIYET  420
SSQGRSSSHT KGCISMKSAP EEKLAAESFL SSFPHFVRVM KKFNVSGSYT LKIPYQFSMQ  480
HLPSCRTEVI LRNLKGKCWT VNSIPTIKVQ TLHTFCGGWM AFVRDNDIQM GDICIFELIG  540
KNELRVHISG VGQQGSDYQS GGVGSNAVVP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027148709.10.0uncharacterized protein LOC113749224
TrEMBLA0A068UIZ60.0A0A068UIZ6_COFCA; Uncharacterized protein
STRINGXP_009781392.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-16B3 family protein