PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc10_g03720

Common Name

GSCOC_T00024909001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 213aa MW: 21360.3 Da PI: 8.4868

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g03720	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	23	82	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCdstntkfCyynny+lsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk+ +ss Cc10_g03720 23 PEHLPCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTRGGTLRNVPVGGGSRKSSSSS 82 57899**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	22	77	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-33	25	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.478	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MSSETGDPRP ARLSTMATRP SEPEHLPCPR CDSTNTKFCY YNNYNLSQPR HFCKSCRRYW 60 TRGGTLRNVP VGGGSRKSSS SSSSSSSSSN KRPRTTSGTN SPTATTPTAS SSSDSGYGLG 120 PGLHGLGFGL GGMDWPMESV VAGQGNGGGV GGAGVGVGGG DGISDGSGAG GSSSSGCNNT 180 WQMGSGVEGG LAEGDCFGWP DLAISMPGKG LK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009769	7e-43	AP009769.1 Lotus japonicus genomic DNA, clone: LjT13A22, TM1930, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027093939.1	1e-67	dof zinc finger protein DOF3.4-like
Refseq	XP_027149276.1	1e-67	dof zinc finger protein DOF3.4
TrEMBL	A0A068UH66	1e-147	A0A068UH66_COFCA; Uncharacterized protein
STRING	XP_010263782.1	2e-57	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	5e-32	OBF binding protein 1