PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc10_g05640

Common Name

GSCOC_T00034784001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 199aa MW: 20887.7 Da PI: 4.9567

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g05640	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.9	9.9e-31	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlrr+C+++C+l+p++ p++q++++ +v k+FG+s ++++++a+p+++++++++sl+yeA+ r+ +Pv+Gavg+++++++ ++++++e Cc10_g05640 2 SCNGCRVLRRGCSDKCALRPCLgriptPQAQANATLFVSKFFGRSDLMSFITAVPDSKKPALFQSLLYEACGRTVNPVSGAVGLLSTGNWPVCEAAVE 99 6**********************9999*****************************************************************99 PP DUF260 94 lallk 98 ++l++ Cc10_g05640 100 TVLAG 104 98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.22	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MSCNGCRVLR RGCSDKCALR PCLGRIPTPQ AQANATLFVS KFFGRSDLMS FITAVPDSKK 60 PALFQSLLYE ACGRTVNPVS GAVGLLSTGN WPVCEAAVET VLAGGTLRPV SGVGVLSPDS 120 NEASEAFCNS GGLWRVQPPF FMHGSDGDEM MVEFESDQNM SASASFRSSE ASDVWGSFGS 180 CGIEGVGGKE PKLLNLFV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027149787.1	1e-141	LOB domain-containing protein 38-like
Swissprot	Q9FN11	1e-56	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A068TYW9	1e-142	A0A068TYW9_COFCA; Uncharacterized protein
STRING	XP_009606111.1	2e-68	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-58	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]