PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g07710
Common NameGSCOC_T00034488001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 143aa    MW: 15296.5 Da    PI: 5.5808
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g07710genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000684322355
                 HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55
                 L+el+P +    +k   Ka +L + ++Y++sLq
  Cc10_g07710  4 LQELVPGC----NKITGKAVMLDEIINYVQSLQ 32
                 999****9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.667131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-9247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-10449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MRLLQELVPG CNKITGKAVM LDEIINYVQS LQQQVEFLSM KLATVNPELN VDLDRIFQKD  60
ILHSRGSSAA TVGIGPGLNS SHPFPGYPQG SFPGISGAAA PFHPVPQAVW DNELQSILQM  120
GFDTSPSINN LGPNAGRSKL EL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089992.13e-98transcription factor bHLH74-like isoform X1
RefseqXP_027089993.13e-98transcription factor bHLH74-like isoform X1
SwissprotQ6NKN91e-48BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A068TXG21e-99A0A068TXG2_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000125911e-71(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52502435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.15e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]