PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g07840
Common NameGSCOC_T00034474001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 277aa    MW: 30934.9 Da    PI: 8.1632
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g07840genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-19126180256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq  +Le+ F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Cc10_g07840 126 RKKLRLTKEQSLILEDSFKEHSTLNPKQKQALANRLNLRPRQVEVWFQNRRARTK 180
                  78889************************************************98 PP
2HD-ZIP_I/II122.12.8e-39126214190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+keq+ +LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++lkeen+rL+ke +eL+ +
  Cc10_g07840 126 RKKLRLTKEQSLILEDSFKEHSTLNPKQKQALANRLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLKEENRRLNKELQELK-A 214
                  69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-18120185IPR009057Homeodomain-like
SuperFamilySSF466892.35E-18122183IPR009057Homeodomain-like
PROSITE profilePS5007117.265122182IPR001356Homeobox domain
SMARTSM003894.2E-17124186IPR001356Homeobox domain
CDDcd000861.71E-16125183No hitNo description
PfamPF000461.1E-16126180IPR001356Homeobox domain
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
SMARTSM003401.4E-20182227IPR003106Leucine zipper, homeobox-associated
PfamPF021837.8E-10182216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVFDINICNT RLSLGLGSTF TTRNNDQNHL PQFDHHEEFK NKSSPKIDHF SLTLGLPSEL  60
GNISVDAGAK GDQSCNIHGQ QASSVSAVSS FSNSSVKRER EASVEEVEEE RVSPKICEDQ  120
DEEGPRKKLR LTKEQSLILE DSFKEHSTLN PKQKQALANR LNLRPRQVEV WFQNRRARTK  180
LKQTEVDCEL LKKCCETLKE ENRRLNKELQ ELKAMKLAAP PPLYMQIPAA TLSMCPSCER  240
ISGGGHVGEK SSKISFSIGA KPHYYSPFAN HPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092368.10.0homeobox-leucine zipper protein HAT22-like
SwissprotP466044e-82HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A068TY340.0A0A068TY34_COFCA; Uncharacterized protein
STRINGPOPTR_0007s14590.12e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-77HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]