PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g09120
Common NameGSCOC_T00034294001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 138aa    MW: 15085 Da    PI: 6.5176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g09120genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.6e-141766255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 +++G+r +k +g+Wv+eIr+p   g +  r +lg++  +e Aa a++ a  +l+ 
  Cc10_g09120 17 RFRGIRLRK-WGKWVSEIRVP---G-TqDRLWLGSYAAPEAAAMAHDVAYYCLRE 66
                 79*****99.**********8...3.35************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.56E-151676No hitNo description
Gene3DG3DSA:3.30.730.102.6E-221776IPR001471AP2/ERF domain
SMARTSM003805.7E-231782IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-151774IPR016177DNA-binding domain
PROSITE profilePS5103219.3221776IPR001471AP2/ERF domain
PfamPF008471.4E-71766IPR001471AP2/ERF domain
PRINTSPR003673.9E-71829IPR001471AP2/ERF domain
PRINTSPR003673.9E-74056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MSSSDEGGSS CSTSQKRFRG IRLRKWGKWV SEIRVPGTQD RLWLGSYAAP EAAAMAHDVA  60
YYCLRENASL DDFNFPLMLP AGVQRGMSPR SVQKAATDAG MAVDAQIIAK HIPSWDGKEF  120
SRELGDQALN ISVDDYL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027090665.12e-81ethylene-responsive transcription factor ERF020
SwissprotO805426e-41ERF19_ARATH; Ethylene-responsive transcription factor ERF019
SwissprotQ9C9I86e-41ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A068TY533e-97A0A068TY53_COFCA; Uncharacterized protein
STRINGXP_009767328.13e-61(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94942028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.11e-42ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]