PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g13750
Common NameGSCOC_T00035242001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 194aa    MW: 22703.2 Da    PI: 9.6465
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g13750genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.9e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien+ nr+vt+skR++gi+KKA+E+ vLCda+v++iif+++gk++ey+s
  Cc10_g13750  9 KRIENTNNRHVTYSKRKTGIMKKAKEITVLCDAKVSLIIFGTSGKMHEYIS 59
                 79***********************************************86 PP
2K-box53.21.3e-1871122152
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLq 52 
                  yq+s+gk+l++ak+e+l++e++++kke++++q e+Rhl+Ged++sL++keL+
  Cc10_g13750  71 YQRSTGKKLWDAKHENLSNEIDRVKKENDSMQIELRHLKGEDITSLNYKELM 122
                  789999*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.992161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-34296IPR002100Transcription factor, MADS-box
CDDcd002659.77E-36280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-26323IPR002100Transcription factor, MADS-box
PfamPF003199.8E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-263859IPR002100Transcription factor, MADS-box
PfamPF014864.3E-982122IPR002487Transcription factor, K-box
PROSITE profilePS512978.16984175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGRGKIEIKR IENTNNRHVT YSKRKTGIMK KAKEITVLCD AKVSLIIFGT SGKMHEYISP  60
STNLVEMLDA YQRSTGKKLW DAKHENLSNE IDRVKKENDS MQIELRHLKG EDITSLNYKE  120
LMSEIIKMIR KTGEMLEEEN KQLQYIWHQQ EMANMKGAIG ERDDVYQRVR DYPSQMPFAF  180
RVQPMQPNLH ERI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-17191183MEF2 CHIMERA
6bz1_B3e-17191183MEF2 CHIMERA
6bz1_C3e-17191183MEF2 CHIMERA
6bz1_D3e-17191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU3322840.0GU332284.1 Coffea arabica MADS-box protein GLO subfamily (C07) mRNA, complete cds.
GenBankKJ4832340.0KJ483234.1 Coffea arabica PI (PI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092769.11e-139floral homeotic protein PMADS 2-like
SwissprotQ074741e-99MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLA0A068UU161e-142A0A068UU16_COFCA; Uncharacterized protein
STRINGXP_009608638.13e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-79MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]