PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g14440
Common NameGSCOC_T00006178001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 183aa    MW: 19715.5 Da    PI: 10.2929
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g14440genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.63.6e-15100160362
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk.eleelkkevaklkse 62 
                  + +r+rr++kNRe+A rsR+RK+a++ eLe  +  Le+eN++L k ++e+ k+ ++ lk +
  Cc10_g14440 100 AQQRQRRMIKNRESAARSRERKQAYQVELEAMAVRLEEENEQLLKeKAERTKERCKLLKEK 160
                  679***************************************8651567777777766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.2E-1394156No hitNo description
SMARTSM003384.9E-1098162IPR004827Basic-leucine zipper domain
PfamPF001705.8E-13100160IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.898100152IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-9102157No hitNo description
CDDcd147073.80E-14102148No hitNo description
PROSITE patternPS000360105120IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MTLEDFLVKA GAVEESAVAA AAGVEGEVKV EAAAVAGTSG GMFAFDSPYM SRQGSVESGG  60
GLGYASAGGL ETMGSGGLGG GGGRGKRRAS SLLEPMDKAA QQRQRRMIKN RESAARSRER  120
KQAYQVELEA MAVRLEEENE QLLKEKAERT KERCKLLKEK VIPVVEKRRP ARILRRVRSM  180
EW*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027094727.11e-126G-box-binding factor 4-like isoform X2
RefseqXP_027150041.11e-126G-box-binding factor 4-like
SwissprotP427779e-45GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A068VG931e-123A0A068VG93_COFCA; Uncharacterized protein
STRINGSolyc04g071510.2.17e-67(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27712452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.12e-28bZIP family protein