PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g16120
Common NameGSCOC_T00033824001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Whirly
Protein Properties Length: 127aa    MW: 13941.9 Da    PI: 7.7321
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g16120genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly119.91.6e-3738854139
       Whirly  54 sfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                   falsatev+++++++++++ effhdpa+ +sn+G+vrk+l+++P++dGsG+f++l+v n+++k+ne+++vPv+ aefav+r++++
  Cc10_g16120   3 CFALSATEVGSMINMGPQDTREFFHDPAMLSSNAGQVRKSLSIKPHADGSGYFFSLNVVNNILKTNERLVVPVTAAEFAVMRTAFS 88 
                  69*********************************************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF544473.84E-373124IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.101.8E-413105IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.1E-32385IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MHCFALSATE VGSMINMGPQ DTREFFHDPA MLSSNAGQVR KSLSIKPHAD GSGYFFSLNV  60
VNNILKTNER LVVPVTAAEF AVMRTAFSFA LPRIMGWDQY SNQPLGTAHK SPSKVLPHLT  120
DSEWDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A5e-56210568171StWhy2
3n1i_A5e-56210568171protein StWhy2
3n1j_A5e-56210568171Protein StWhy2
3n1k_A5e-56210568171protein StWhy2
3n1l_A5e-56210568171protein StWhy2
3r9y_A5e-56210568171Why2 protein
3r9z_A5e-56210568171Why2 protein
3ra0_A5e-56210568171Why2 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092747.11e-88single-stranded DNA-binding protein WHY2, mitochondrial-like
SwissprotD9J0343e-63WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A068UV663e-90A0A068UV66_COFCA; Uncharacterized protein
STRINGSolyc11g044750.1.18e-62(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97822228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.14e-52WHIRLY 2