PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g16130
Common NameGSCOC_T00033825001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Whirly
Protein Properties Length: 133aa    MW: 15202.5 Da    PI: 10.5847
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g16130genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly65.21.2e-2064117154
       Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqs 54 
                  svyk+kaal+  +++ptf +ldsg +kl+r+G+++l++ +a++erkydWekkq 
  Cc10_g16130  64 SVYKGKAALSTSPMLPTFRKLDSGGVKLDRKGSIMLTFWPAVGERKYDWEKKQA 117
                  79**************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.103.5E-2652116IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.8E-1957116IPR009044ssDNA-binding transcriptional regulator
PfamPF085368.3E-2065117IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MIFKINSSSF IHYFRNLLFQ KRFSPNDGTS LWSCSFATQS GTSTARQSFV ADGSMTDKIF  60
ASYSVYKGKA ALSTSPMLPT FRKLDSGGVK LDRKGSIMLT FWPAVGERKY DWEKKQASWP  120
CFLRWRFIYV LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-2853116568StWhy2
3n1i_A1e-2853116568protein StWhy2
3n1j_A1e-2853116568Protein StWhy2
3n1k_A1e-2853116568protein StWhy2
3n1l_A1e-2853116568protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092747.11e-68single-stranded DNA-binding protein WHY2, mitochondrial-like
SwissprotD9J0349e-35WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A068UTE62e-92A0A068UTE6_COFCA; Uncharacterized protein
STRINGXP_009598355.13e-37(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97822228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.15e-27WHIRLY 2