PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g01500
Common NameGSCOC_T00019559001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 236aa    MW: 26609.9 Da    PI: 9.0067
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g01500genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3382.9e-1223107294
                  EEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   2 fkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  +kv+   d++k  + l +p  +a+ + g+   +   +l+d +g+ W v+l   k +++ ++++GW + v++n ++  Df+vF +dg++ f   +
  Cc11_g01500  23 CKVF---DANKYfNKLHIPSAYASYMRGN--LPDRAVLRDCDGNMWAVEL--AKVGSEWFFQEGWAKVVQDNLIEHQDFLVFLFDGEKVF--DF 107
                  5666...2222225699******555666..6668***************..888888899**********************9998888..44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-1815112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-1717112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.44820113IPR003340B3 DNA binding domain
CDDcd100179.56E-1322110No hitNo description
PfamPF023621.7E-1022105IPR003340B3 DNA binding domain
SMARTSM010192.8E-522113IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MANPQARANL ATQAQSQRNL KFCKVFDANK YFNKLHIPSA YASYMRGNLP DRAVLRDCDG  60
NMWAVELAKV GSEWFFQEGW AKVVQDNLIE HQDFLVFLFD GEKVFDFTII GNNLLEKEGV  120
GSLKFQLEVE KGNGNGEKAQ ELNDMNGDNL IEEKEQPLNG VKRDFQKLTS PTSGSRKYRS  180
EKNGQEGASA SDGIKKKARH DLYGASIFRS GEHALPENPY FVTRIRTKRQ NALVR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083404.11e-172B3 domain-containing protein At5g57720-like isoform X1
RefseqXP_027083405.11e-172B3 domain-containing protein At5g57720-like isoform X1
RefseqXP_027083406.11e-172B3 domain-containing protein At5g57720-like isoform X1
RefseqXP_027083407.11e-172B3 domain-containing protein At5g57720-like isoform X1
RefseqXP_027083408.11e-172B3 domain-containing protein At5g57720-like isoform X1
TrEMBLA0A068U9F51e-174A0A068U9F5_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.12e-16B3 family protein