PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g01890
Common NameGSCOC_T00019496001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family CPP
Protein Properties Length: 946aa    MW: 101472 Da    PI: 6.2496
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g01890genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.82.8e-15532570341
          TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                  +k+CnCkk+kClk+YC+Cfaag +C+e C C++C+N+ e
  Cc11_g01890 532 CKRCNCKKTKCLKLYCDCFAAGIYCAEPCACQGCFNRPE 570
                  79**********************************876 PP
2TCR491.2e-15619657139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCkkskClkkYCeC++a++ Cs+ C+Ce C+N 
  Cc11_g01890 619 RHKRGCNCKKSKCLKKYCECYQANVGCSDGCRCEACENV 657
                  589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-15530571IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.708531659IPR005172CRC domain
PfamPF036383.1E-11533568IPR005172CRC domain
SMARTSM011144.9E-16619660IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.4E-11621656IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 946 aa     Download sequence    Send to blast
MDSSPEQPSK PNNSTHSPPL PIPPLQVQES PVFSYISNLS PIKPDKAALG SQGFPGINSP  60
PLVFRSPHIN PKSQPSFLKR PQSAGSSDAG LSEQNESCKD TLTVAEESRV SSCHLSSRLR  120
SCPQKEFIDD SKPEKASSPP VCGNDYLTDI VNMDGGDSDS SANLTPKSSD DVSQSQHELL  180
DSKESAENTE DEDDTRREEM KMGAASVTLE QAEEYNLKDS PSDLKSVVPD QNSGDGNGPP  240
DLHPRVEPDK SVGHALENQS GGHSMAENAG SGHVFEVGCN LLSESLQVAQ DCGRSLENAG  300
VQCTESLENK VHGHCAQIVQ HQHGISRRCL QFEDTQGKII PNSGYQNSSG SVGYPRSPAS  360
PAGSEVLESA SLNKPASPSN RLLANMTPPF FSPQTSGNYN SKLPKRSGIG LHLNSIVNSM  420
QMGSGAKVSM RSAERGSFNG LGKKSMSITG SSLRHNFSTS ANVEGVPISD ESRHNEHASD  480
AANSASTLSP CSMKPLYEPV VLKPIELQPN SSNKRMCTSE TSDSFVDFGH GCKRCNCKKT  540
KCLKLYCDCF AAGIYCAEPC ACQGCFNRPE YEDTVLETRQ QIESRNPLAF APKIIQHLTE  600
PPTNVCAEDG SHFTPSSARH KRGCNCKKSK CLKKYCECYQ ANVGCSDGCR CEACENVYGQ  660
KGEFGMIKDL ISKHGEKLDS SFGTTLESVA SKDGLLHNEL YNPHSLTPLT PAFQCSDHGK  720
GAPKAWLSSG GYLQSPESCL TYLAPYGMSP GQAGNPDTHN MIIEANTGIM DLVSFGQGIG  780
YGNGHTVNQL SPRCEVPRND GRLADLPDPQ DWENTSRAQT YANHQVSSAN SLRWRRSSTH  840
FDGTKPDEAA DFDGGLYSIL DDDTPEILKE TPMPPNAIKV SSPNKKRVSP PHGQGTELGS  900
SSSAGLRTGR KFILQAVPSF PPLTPCIDSK GATGMNNSQK SSSGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1653565714121Protein lin-54 homolog
5fd3_B5e-1653565714121Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082997.10.0protein tesmin/TSO1-like CXC 4 isoform X1
TrEMBLA0A068U8C00.0A0A068U8C0_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69802128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.17e-61Tesmin/TSO1-like CXC domain-containing protein