PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc11_g02140

Common Name

GSCOC_T00033020001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 420aa MW: 47988.6 Da PI: 7.601

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g02140	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	60.6	2.8e-19	249	297	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+le+l+++ +++dAAk++gv+ +LKriCR+yGI+RWP Rk +++ Cc11_g02140 249 GITLEVLEQNSTRKLEDAAKHIGVSRFTLKRICREYGIPRWPPRKARKV 297 599******************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.3	233	317	IPR003035	RWP-RK domain
Pfam	PF02042	5.8E-16	250	297	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.26E-14	323	413	No hit	No description
PROSITE profile	PS51745	15.351	330	412	IPR000270	PB1 domain
SMART	SM00666	2.8E-10	330	412	IPR000270	PB1 domain
Pfam	PF00564	6.3E-13	331	411	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.9E-12	333	411	No hit	No description
CDD	cd05992	2.20E-11	333	409	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MCLPKSTTGG ESEDYLCKPP HQSKRGEIAR IEEALDKARK IRGLRNRGIE IWTISGEILS 60 SREGVDFIRK GQGVVGRAFL SKSACFCRDI RQLSITDYPL LLKARSLGYS SCFAVCLQSS 120 CSNNCIYVLE FFLPTNEKDY GDCRIMLNSI MEKLKKYLRS SFKIALGQEL GQKLTVEEQA 180 TSIKDRHTQY LMWFGSTIEP TSTERNLIAD YEPIVEDPER DDASIEQRDN EVTNLKVQKP 240 SYTLKSDLGI TLEVLEQNST RKLEDAAKHI GVSRFTLKRI CREYGIPRWP PRKARKVNQA 300 FAEQKIVQPS TEDTHEPHQS GATRLEDDNG MWVKAEYQGS MIKFRLPFSA RKIDLEEKVA 360 QRLNLAVGSF KIEYQDEDDD RIWITCDEDL RTFMSSLSSL GRTAIKMYIV EDSSNRRDQ*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MCLPKSTTGG ESEDYLCKPP HQSKRGEIAR IEEALDKARK IRGLRNRGIE IWTISGEILS  60
SREGVDFIRK GQGVVGRAFL SKSACFCRDI RQLSITDYPL LLKARSLGYS SCFAVCLQSS  120
CSNNCIYVLE FFLPTNEKDY GDCRIMLNSI MEKLKKYLRS SFKIALGQEL GQKLTVEEQA  180
TSIKDRHTQY LMWFGSTIEP TSTERNLIAD YEPIVEDPER DDASIEQRDN EVTNLKVQKP  240
SYTLKSDLGI TLEVLEQNST RKLEDAAKHI GVSRFTLKRI CREYGIPRWP PRKARKVNQA  300
FAEQKIVQPS TEDTHEPHQS GATRLEDDNG MWVKAEYQGS MIKFRLPFSA RKIDLEEKVA  360
QRLNLAVGSF KIEYQDEDDD RIWITCDEDL RTFMSSLSSL GRTAIKMYIV EDSSNRRDQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027174643.1	1e-127	protein NLP7-like
TrEMBL	A0A068URH0	0.0	A0A068URH0_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-39	NIN like protein 7