PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc11_g03680

Common Name

GSCOC_T00033959001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HB-other

Protein Properties

Length: 162aa MW: 19006.6 Da PI: 8.4729

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g03680	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.9	5.6e-16	28	78	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ + +Lee+F+ n++p+++er+eL ++l+++ +++k+WFqN+R + k Cc11_g03680 28 RNSPDLVAQLEEYFKDNPHPNENERKELGRELRVDPKRIKFWFQNKRNQVK 78 56778899***************************************8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.8E-16	11	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.25E-15	16	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.981	20	80	IPR001356	Homeobox domain
SMART	SM00389	2.2E-11	22	84	IPR001356	Homeobox domain
CDD	cd00086	8.04E-12	27	80	No hit	No description
Pfam	PF00046	2.0E-13	28	78	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MDPVNGGIGS DDEVSSNNSP KHKNQYHRNS PDLVAQLEEY FKDNPHPNEN ERKELGRELR 60 VDPKRIKFWF QNKRNQVKAQ IARAENHLLR EENQKIYLEN MMMRERMRCT VCSTCAGLAT 120 ATKQDDDRKL ILRQLLVENA QLKEEVYFMH SSFLRIYILS I*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027096869.1	1e-105	homeobox-leucine zipper protein ROC8-like
TrEMBL	A0A068UTG5	1e-117	A0A068UTG5_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13886	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	2e-33	HD-ZIP family protein