PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc11_g03720

Common Name

GSCOC_T00033966001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HB-other

Protein Properties

Length: 176aa MW: 20570.5 Da PI: 8.8641

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g03720	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38.4	2.1e-12	33	77	7	56
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++q+++Le+ ++p+++e+++L+++lgL+ q+k+WFqN+R + k Cc11_g03720 33 HSAQQIQRLEA-----QHPTKDEKQQLSTELGLSSGQIKFWFQNKRNQIK 77 67777888775.....89****************************8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-10	15	77	IPR009057	Homeodomain-like
SMART	SM00389	3.6E-5	27	83	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.46E-11	31	86	IPR009057	Homeodomain-like
CDD	cd00086	3.37E-9	31	77	No hit	No description
Pfam	PF00046	9.6E-10	33	77	IPR001356	Homeobox domain
PROSITE profile	PS50071	12.05	44	79	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	54	77	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MAMFIRREAQ LFHSNPSKAW TQEQKNQEQV RRHSAQQIQR LEAQHPTKDE KQQLSTELGL 60 SSGQIKFWFQ NKRNQIKLRN EREENDALTL ENEKLRMENL IMRGMLMDPY CKKCHGGLTE 120 EETRKLHLQG LANENAKLKK EVDSSFHVFE LSKILATESI FFSLSYPFFL LNCAA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027097544.1	1e-36	homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A068UT54	1e-126	A0A068UT54_COFCA; Uncharacterized protein
STRING	Migut.H02245.1.p	5e-28	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13886	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	4e-26	homeodomain GLABROUS 11