PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g03760
Common NameGSCOC_T00033972001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HB-other
Protein Properties Length: 182aa    MW: 21000.9 Da    PI: 7.5617
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g03760genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.22.1e-162777656
                 S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++++q+++Le++F+ +++p+++e+++L+ +lgL+  q+k+WFqN+R + k
  Cc11_g03760 27 RHSAQQIQRLEAFFKTSQHPTKDEKQQLSIELGLSFGQIKFWFQNKRNQIK 77
                 6899*******************************************8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-18773IPR009057Homeodomain-like
SuperFamilySSF466893.26E-17879IPR009057Homeodomain-like
SMARTSM003891.3E-131983IPR001356Homeobox domain
PROSITE profilePS5007115.9531979IPR001356Homeobox domain
CDDcd000862.37E-142677No hitNo description
PfamPF000468.9E-142777IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDFAYSGDGS SDEASVDTGK KKEQFRRHSA QQIQRLEAFF KTSQHPTKDE KQQLSIELGL  60
SFGQIKFWFQ NKRNQIKLRN EREQNDALTL ENEKLRVENL ILRGMLMDPF CTKCHGGLTE  120
EETRKLHLQG LANENAKLKK EVDSSFHVFE LSKILAMESI FFSVLPFFSF ELCSLMKKLD  180
S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845089.14e-39PREDICTED: homeobox-leucine zipper protein ROC8-like isoform X3
RefseqXP_027097544.14e-40homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A068USU71e-129A0A068USU7_COFCA; Uncharacterized protein
STRINGMigut.H02245.1.p6e-38(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13886814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.19e-33homeodomain GLABROUS 11