PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g03780
Common NameGSCOC_T00033977001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HB-other
Protein Properties Length: 172aa    MW: 20361.4 Da    PI: 9.7761
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g03780genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.55.3e-1449911456
                 HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  ++ +F+ n++p+++er+eL ++lg++ r +k+WFqN+R + k
  Cc11_g03780 49 LMNMFFKANPHPNQNERKELGNELGVDSREIKFWFQNKRNQVK 91
                 56677888*******************************8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.0E-63597IPR001356Homeobox domain
SuperFamilySSF466897.27E-123896IPR009057Homeodomain-like
CDDcd000861.61E-84093No hitNo description
Gene3DG3DSA:1.10.10.602.6E-1241100IPR009057Homeodomain-like
PfamPF000461.6E-114991IPR001356Homeobox domain
PROSITE profilePS5007113.0865093IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDLKMRFHPT TRRNTRINIA ENHQIWLHGL KSKNIVNYSC IYNRKISDLM NMFFKANPHP  60
NQNERKELGN ELGVDSREIK FWFQNKRNQV KAQIARAENQ TLSEENQRIH SENMMLMERI  120
RYPICLACAT ANGQDDDRKL ILRQLLIENA QLKEEVYFTH SNFVRICVLT L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027099678.12e-48homeobox-leucine zipper protein ROC8-like
TrEMBLA0A068UTH91e-125A0A068UTH9_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13886814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.15e-26homeodomain GLABROUS 7