PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g06230
Common NameGSCOC_T00020627001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 248aa    MW: 26882.9 Da    PI: 6.3075
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g06230genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002795117123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  Cc11_g06230  95 FSCNYCRRKFYSSQALGGHQNAH 117
                  89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-693122No hitNo description
PROSITE profilePS5015711.38595122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MKAPTINLES EEDSEVSSQV ASNISTQEVS PGPSKESITS SPSLTHSLDL ERDPRPVTLD  60
LTLGFNSSDT DSKGVGENNG EVFPHPPTPG VSRVFSCNYC RRKFYSSQAL GGHQNAHKRE  120
RTLAKRAMRM NMLSDRYASL ASLPLHGSAF RSLGIEAHAS VHQPIMSSDR PLHAIRGGAK  180
FEQGYFGMPV YMEDDEVEMY WPGSFRQVEG VASNLALNSG QSSSINFVAV APPPRTDSST  240
PDLNLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027099753.10.0zinc finger protein 4-like
RefseqXP_027099754.10.0zinc finger protein 4-like
RefseqXP_027099755.10.0zinc finger protein 4-like
TrEMBLA0A068UAD40.0A0A068UAD4_COFCA; Uncharacterized protein
STRINGXP_009768278.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.15e-52zinc finger protein 4